sábado, 10 de abril de 2021

1991 - Miyamoto & Cracraft (Eds.) - Phylogenetic Analysis of DNA Sequences

 


"The  comparative analysis of DNA  sequences is becoming increasingly important  in systematic and  evolutionary biology and will continue to  do so as faster and more efficient methods for collecting these data are developed. Large  amounts  of comparative  sequence  data  will  be  required  to answer most  molecular  systematic  questions,  but  this  labor-intensive  effort  will only  be  the  first  of several  problems  faced  by the  systematist. Although the  use  of  DNA  sequences  in  systematics is still  in its  infancy,  already a healthy mixture of opinion exists about  the most appropriate  methods for reconstructing phylogenetic history from  nucleotide data. Moreover,  some question  whether DNA  sequences  will prove to be more informative in all cases when compared  to more traditional data-bases. Thus, in using DNA sequences  comparatively,  the  biologist  is confronted  by  staggering complexities  that  are  often  not  appreciated  even by the  expert  systematist or molecular  evolutionist.

This volume  has  assembled  an  internationally recognized  group  of investigators  representing  different  theoretical viewpoints and disciplines to address critically a diversity of questions about DNA systematics. The book begins  with  an  introduction  by  Miyamoto  and  Cracraft,  followed  by  14 additional  chapters  emphasizing  data  acquisition, sequence  analysis, and the broader systematic importance of nucleotide information. Contributors on  data  acquisition  have  focused  on  improved  techniques  for  obtaining comparative  sequence  information by manual (Slightom et al.) and automated  (Ferl et al.) approaches.  With regard to data analysis, authors have concentrated on methodological problems dealing with sequence alignment (Waterman et al. and Mindell) and different  tree-building algorithms (Nei, Sidow and Wilson,  Fitch  and Ye,  and Penny et al.).  Finally, contributors have  focused  on  more  general  issues  having broad  implications  within systematics.  Specifically, their  chapters have concentrated  on the  evaluation  of  phylogenetic  reliability  and  information content  of  different  sequences  and  data  sets (Cracraft and Helm-Bychowski, Li and Gouy,  and Hillis),  on the relationship  between  molecular evolutionary bias and phylogeny  reconstruction  (Larson),  and  on  the  application of consensus and congruence  approaches  in systematics (Swofford  and  Wheeler).

This  book  has  its roots in the  symposium "Recent Advances in Phylogenetic  Studies  of  DNA  Sequences," which was part  of the  special centennial  celebration  of  the  American  Society  of  Zoologists,  held  in conjunction  with  the  Society  of  Systematic Zoology,  on  December  26-30, 1989 in Boston, Massachusetts.  Researchers  from  different  disciplines and approaches  presented  papers  at  the  symposium, but  rather  than  just describe  their  methods  or  dwell on particular  groups,  each  participant concentrated on the strengths, limitations, and assumptions of their  approaches relative  to  others.  The  diversity of topics  and  viewpoints represented  at the  symposium constituted its greatest  strength, and in turn, has now become  the  most  important  quality of this  book.

The  following  people  and  organizations  are  profoundly acknowledged for  their  assistance.  The  American  Society  of  Zoologists  and  Society of Systematic Zoology  contributed administrative and financial assistance for the symposium. J.S. Farris, J. Felsenstein, A.G. Kluge, T.D. Kocher, J.A. Lake, and A. Meyer presented papers at the symposium, but chose not to contribute chapters.  External reviews of the individual chapters were provided  by M.W. Allard,  J.M. Carpenter,  J.  Felsenstein,  D.H.A.  Fitch, W.M.  Fitch,  D.M. Hillis,  R.  Holmquist,  R.L. Honeycutt,  B.F.  Koop, W.-H.  Li, D.R. Maddison, D.P. Mindell, C.J. Nairn, J.L. Patton, D.R. Siemieniak, J.L. Slightom, D.L. Swofford,  B.S. Weir, W.C. Wheeler,  R. Wilson, C.-I. Wu,  and E.A. Zimmer.  W.F. Curtis of Oxford University Press  is recognized  for  his encouragement  and  for  his help  in seeing  this volume  through  the  initial  stages  of  production.  The  book's  index  was compiled by M.R. Tennant, and K. Lee, and G. Kiltie, and A. McClaughry helped with all aspects of the secretarial work. Both editors were  supported by  National  Science  Foundation  awards  during  the  organization  of  the symposium and completion  of the  book. Financial assistance was also provided  by our  respective  Departments  and  Universities. All  of these  individuals and institutions are  gratefully  thanked for their help  and  support.

Finally, Michele R.  Tennant  and Terry Root are especially thanked for their continuous love and  support."


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